PPT6104 / BIOINFORMATICS IN PLANT PATHOLOGY

DERSİN HAFTALIK İÇERİĞİ

 
KONULAR 
KAYNAKLAR 
1Publicly available gene banks, access to data at genebanks and evaluation 11
2Comparison of DNA sequences partially or fully sequenced pathogens with genebank data11
3Data submission process to genebank (The National Center for Biotechnology Information­NCBI)11
4Trimming of raw DNA sequence and sequence assembly (Steaden package? Pregap and Gap4)11
5Trimming of raw DNA sequence and sequence assembly (Steaden package? Pregap and Gap4)11
6Multi sequence alingments (Bioedit, Clustal W, Mega5) 11
7Construction of phylogenetic trees (Why phylogenetic trees constructed?) 11
8Construction of phylogenetic trees (Basic methods used for phylogenetic tree construction? Mega5)11
9Construction of phylogenetic trees (Neighbour joining, parsimony, maximum likelyhood trees)11
10Construction of phylogenetic trees (Bootstrap analysis and interpretation the results) 11
11Amino acid determination from DNA sequences 11
12Multi amino acid sequence alignments and phylogenetic analysis 11
13Evaluaiton of phylogenetic research on different biological systems 11